3D structure

PDB id
5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CUCAUCAGACCCCAGAAAAGG*CCUGAAAAUGGAUGGCGCUGGAG
Length
44 nucleotides
Bulged bases
5LKS|1|L5|U|1930, 5LKS|1|L5|C|1931, 5LKS|1|L5|C|1935, 5LKS|1|L5|G|1940, 5LKS|1|L5|A|2041, 5LKS|1|L5|U|2044, 5LKS|1|L5|G|2045, 5LKS|1|L5|G|2055
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LKS|1|L5|C|1926
5LKS|1|L5|U|1927
5LKS|1|L5|C|1928
5LKS|1|L5|A|1929
5LKS|1|L5|U|1930
5LKS|1|L5|C|1931
5LKS|1|L5|A|1932
5LKS|1|L5|G|1933
5LKS|1|L5|A|1934
5LKS|1|L5|C|1935
5LKS|1|L5|C|1936
5LKS|1|L5|C|1937
5LKS|1|L5|C|1938
5LKS|1|L5|A|1939
5LKS|1|L5|G|1940
5LKS|1|L5|A|1941
5LKS|1|L5|A|1942
5LKS|1|L5|A|1943
5LKS|1|L5|A|1944
5LKS|1|L5|G|1945
5LKS|1|L5|G|1946
*
5LKS|1|L5|C|2036
5LKS|1|L5|C|2037
5LKS|1|L5|U|2038
5LKS|1|L5|G|2039
5LKS|1|L5|A|2040
5LKS|1|L5|A|2041
5LKS|1|L5|A|2042
5LKS|1|L5|A|2043
5LKS|1|L5|U|2044
5LKS|1|L5|G|2045
5LKS|1|L5|G|2046
5LKS|1|L5|A|2047
5LKS|1|L5|U|2048
5LKS|1|L5|G|2049
5LKS|1|L5|G|2050
5LKS|1|L5|C|2051
5LKS|1|L5|G|2052
5LKS|1|L5|C|2053
5LKS|1|L5|U|2054
5LKS|1|L5|G|2055
5LKS|1|L5|G|2056
5LKS|1|L5|A|2057
5LKS|1|L5|G|2058

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain L7
5S ribosomal RNA; 5S rRNA
Chain LB
60S ribosomal protein L3
Chain LF
60S ribosomal protein L7
Chain LH
60S ribosomal protein L9
Chain LI
60S ribosomal protein L10-like
Chain LM
60S ribosomal protein L14
Chain LO
60S ribosomal protein L13a
Chain LS
60S ribosomal protein L18a
Chain Lf
60S ribosomal protein L35a
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:

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