IL_5LKS_269

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGGUGAGGC*GCUCCGG

Length

17 nucleotides

Bulged bases

5LKS|1|L5|G|4084, 5LKS|1|L5|G|4086, 5LKS|1|L5|G|4087, 5LKS|1|L5|C|4162, 5LKS|1|L5|U|4163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|4079
5LKS|1|L5|C|4080
5LKS|1|L5|G|4081
5LKS|1|L5|G|4082
5LKS|1|L5|U|4083
5LKS|1|L5|G|4084
5LKS|1|L5|A|4085
5LKS|1|L5|G|4086
5LKS|1|L5|G|4087
5LKS|1|L5|C|4088
*
5LKS|1|L5|G|4161
5LKS|1|L5|C|4162
5LKS|1|L5|U|4163
5LKS|1|L5|C|4164
5LKS|1|L5|C|4165
5LKS|1|L5|G|4166
5LKS|1|L5|G|4167

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a