IL_5LKS_274

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_274 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.2093

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

5LKS|1|L5|U|4638
5LKS|1|L5|G|4639
5LKS|1|L5|C|4640
*
5LKS|1|L5|G|4659
5LKS|1|L5|G|4660
5LKS|1|L5|G|4661

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31