IL_5LKS_284

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

5LKS|1|S2|C|1215, 5LKS|1|S2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LKS_284 not in the Motif Atlas

Homologous match to IL_8P9A_431

Geometric discrepancy: 0.2366

The information below is about IL_8P9A_431

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

5LKS|1|S2|A|1214
5LKS|1|S2|C|1215
5LKS|1|S2|C|1216
5LKS|1|S2|A|1217
*
5LKS|1|S2|U|1681
5LKS|1|S2|C|1682
5LKS|1|S2|C|1683
5LKS|1|S2|C|1684
5LKS|1|S2|U|1685

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

40S ribosomal protein S16

Chain Sc

40S ribosomal protein S28