IL_5LL6_011

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

5LL6|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_011 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.226

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5LL6|1|2|U|144
5LL6|1|2|A|145
5LL6|1|2|U|146
5LL6|1|2|A|147
5LL6|1|2|A|148
5LL6|1|2|C|149
*
5LL6|1|2|G|165
5LL6|1|2|C|166
5LL6|1|2|U|167
5LL6|1|2|A|168
5LL6|1|2|A|169
5LL6|1|2|U|170
5LL6|1|2|A|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A