IL_5LL6_022

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

5LL6|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_022 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1194

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5LL6|1|2|G|363
5LL6|1|2|G|364
5LL6|1|2|G|365
*
5LL6|1|2|C|376
5LL6|1|2|G|377
5LL6|1|2|A|378
5LL6|1|2|U|379
5LL6|1|2|U|380
5LL6|1|2|C|381

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A