IL_5LL6_025
3D structure
- PDB id
- 5LL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUA*UA
- Length
- 5 nucleotides
- Bulged bases
- 5LL6|1|2|U|440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LL6_025 not in the Motif Atlas
- Geometric match to IL_4LFB_014
- Geometric discrepancy: 0.1414
- The information below is about IL_4LFB_014
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 129
Unit IDs
5LL6|1|2|U|439
5LL6|1|2|U|440
5LL6|1|2|A|441
*
5LL6|1|2|U|463
5LL6|1|2|A|464
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- 40S ribosomal protein S4-A
- Chain W
- 40S ribosomal protein S9-A
- Chain d
- 40S ribosomal protein S24-A
- Chain h
- Translation initiation factor RLI1
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