IL_5LL6_032

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_032 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2476

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

5LL6|1|2|A|550
5LL6|1|2|G|551
5LL6|1|2|G|552
5LL6|1|2|G|553
5LL6|1|2|C|554
5LL6|1|2|A|555
5LL6|1|2|A|556
5LL6|1|2|G|557
*
5LL6|1|2|C|587
5LL6|1|2|U|588

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S2

Chain W

40S ribosomal protein S9-A

Chain g

40S ribosomal protein S30-A