IL_5LL6_039
3D structure
- PDB id
- 5LL6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LL6_039 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.3841
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
5LL6|1|2|U|745
5LL6|1|2|A|746
5LL6|1|2|C|747
*
5LL6|1|2|G|802
5LL6|1|2|A|803
5LL6|1|2|A|804
5LL6|1|2|U|805
5LL6|1|2|A|806
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain U
- 40S ribosomal protein S7-A
- Chain X
- 40S ribosomal protein S11-A
- Chain b
- 40S ribosomal protein S22-A
- Chain c
- 40S ribosomal protein S23-A
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