IL_5LL6_053

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_053 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.1264

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5LL6|1|2|G|1111
5LL6|1|2|G|1112
5LL6|1|2|A|1113
5LL6|1|2|G|1114
5LL6|1|2|U|1115
5LL6|1|2|A|1116
5LL6|1|2|U|1117
5LL6|1|2|G|1118
*
5LL6|1|2|U|1129
5LL6|1|2|G|1130
5LL6|1|2|A|1131
5LL6|1|2|A|1132
5LL6|1|2|A|1133
5LL6|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S23-A