IL_5LL6_058

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LL6_058 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.1972

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5LL6|1|2|G|1638
5LL6|1|2|C|1639
5LL6|1|2|C|1640
5LL6|1|2|C|1641
*
5LL6|1|2|G|1760
5LL6|1|2|U|1761
5LL6|1|2|A|1762
5LL6|1|2|A|1763
5LL6|1|2|C|1764

Current chains

Chain 2

18S ribosomal RNA

Nearby chains