IL_5LMN_009
3D structure
- PDB id
- 5LMN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5LMN|1|A|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LMN_009 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.1074
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5LMN|1|A|G|148
5LMN|1|A|A|149
5LMN|1|A|C|150
5LMN|1|A|A|151
5LMN|1|A|A|152
5LMN|1|A|C|153
*
5LMN|1|A|G|168
5LMN|1|A|C|169
5LMN|1|A|U|170
5LMN|1|A|A|171
5LMN|1|A|A|172
5LMN|1|A|U|173
5LMN|1|A|C|174
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain T
- 30S ribosomal protein S20
Coloring options: