IL_5LMN_056

3D structure

PDB id

5LMN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

5LMN|1|A|A|1492, 5LMN|1|A|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMN_056 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.1397

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

5LMN|1|A|C|1407
5LMN|1|A|A|1408
5LMN|1|A|C|1409
*
5LMN|1|A|G|1491
5LMN|1|A|A|1492
5LMN|1|A|A|1493
5LMN|1|A|G|1494

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain W

Translation initiation factor IF-1

Chain X

Translation initiation factor IF-3