IL_5LMN_061

3D structure

PDB id

5LMN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

5LMN|1|A|G|1442|||A, 5LMN|1|A|A|1442|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMN_061 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.1664

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93811.1

Basepair signature

cWW-tHS-L-R-cWW-L

Number of instances in this motif group

3

Unit IDs

5LMN|1|A|C|1440
5LMN|1|A|G|1441
5LMN|1|A|G|1442
5LMN|1|A|G|1442|||A
5LMN|1|A|A|1442|||B
5LMN|1|A|G|1443
*
5LMN|1|A|C|1459
5LMN|1|A|A|1460
5LMN|1|A|G|1461

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20