IL_5LMN_063
3D structure
- PDB id
- 5LMN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- GAGAGG*CUGGU
- Length
- 11 nucleotides
- Bulged bases
- 5LMN|1|A|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LMN_063 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3875
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
5LMN|1|A|G|662
5LMN|1|A|A|663
5LMN|1|A|G|664
5LMN|1|A|A|665
5LMN|1|A|G|666
5LMN|1|A|G|667
*
5LMN|1|A|C|739
5LMN|1|A|U|740
5LMN|1|A|G|741
5LMN|1|A|G|742
5LMN|1|A|U|743
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain O
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S18
Coloring options: