IL_5LMP_009

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

5LMP|1|A|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMP_009 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1246

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5LMP|1|A|G|148
5LMP|1|A|A|149
5LMP|1|A|C|150
5LMP|1|A|A|151
5LMP|1|A|A|152
5LMP|1|A|C|153
*
5LMP|1|A|G|168
5LMP|1|A|C|169
5LMP|1|A|U|170
5LMP|1|A|A|171
5LMP|1|A|A|172
5LMP|1|A|U|173
5LMP|1|A|C|174

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20