IL_5LMP_011
3D structure
- PDB id
- 5LMP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.35 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 5LMP|1|A|U|244, 5LMP|1|A|C|280
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LMP_011 not in the Motif Atlas
- Homologous match to IL_5J7L_014
- Geometric discrepancy: 0.154
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5LMP|1|A|C|242
5LMP|1|A|A|243
5LMP|1|A|U|244
5LMP|1|A|C|245
5LMP|1|A|A|246
5LMP|1|A|G|247
*
5LMP|1|A|C|277
5LMP|1|A|G|278
5LMP|1|A|A|279
5LMP|1|A|C|280
5LMP|1|A|G|281
5LMP|1|A|A|282
5LMP|1|A|C|283
5LMP|1|A|G|284
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
Coloring options: