3D structure

PDB id
5LMP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.35 Å

Loop

Sequence
GAGAG*UGGU
Length
9 nucleotides
Bulged bases
5LMP|1|A|A|665
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LMP_029 not in the Motif Atlas
Homologous match to IL_4LFB_029
Geometric discrepancy: 0.1074
The information below is about IL_4LFB_029
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_15225.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

5LMP|1|A|G|662
5LMP|1|A|A|663
5LMP|1|A|G|664
5LMP|1|A|A|665
5LMP|1|A|G|666
*
5LMP|1|A|U|740
5LMP|1|A|G|741
5LMP|1|A|G|742
5LMP|1|A|U|743

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
30S ribosomal protein S6
Chain O
30S ribosomal protein S15
Chain R
30S ribosomal protein S18

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1725 s