IL_5LMP_030
3D structure
- PDB id
- 5LMP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.35 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LMP_030 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.1188
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
5LMP|1|A|G|673
5LMP|1|A|G|674
5LMP|1|A|A|675
5LMP|1|A|A|676
5LMP|1|A|U|677
5LMP|1|A|U|678
*
5LMP|1|A|A|712
5LMP|1|A|G|713
5LMP|1|A|G|714
5LMP|1|A|A|715
5LMP|1|A|A|716
5LMP|1|A|C|717
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain K
- 30S ribosomal protein S11
- Chain R
- 30S ribosomal protein S18
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