IL_5LMP_031
3D structure
- PDB id
- 5LMP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.35 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5LMP|1|A|A|702
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LMP_031 not in the Motif Atlas
- Homologous match to IL_4LFB_031
- Geometric discrepancy: 0.116
- The information below is about IL_4LFB_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_95727.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5LMP|1|A|G|683
5LMP|1|A|A|684
5LMP|1|A|G|685
5LMP|1|A|U|686
5LMP|1|A|A|687
5LMP|1|A|G|688
*
5LMP|1|A|C|699
5LMP|1|A|G|700
5LMP|1|A|C|701
5LMP|1|A|A|702
5LMP|1|A|G|703
5LMP|1|A|A|704
5LMP|1|A|U|705
5LMP|1|A|A|706
5LMP|1|A|C|707
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S11
- Chain X
- Translation initiation factor IF-3
Coloring options: