IL_5LMP_037

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5LMP|1|A|C|934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMP_037 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1523

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5LMP|1|A|G|933
5LMP|1|A|C|934
5LMP|1|A|A|935
*
5LMP|1|A|U|1380
5LMP|1|A|U|1381
5LMP|1|A|C|1382
5LMP|1|A|C|1383
5LMP|1|A|C|1384

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain Y

mRNA