IL_5LMQ_009
3D structure
- PDB id
- 5LMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5LMQ|1|A|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LMQ_009 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.1178
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_12745.1
- Basepair signature
- cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5LMQ|1|A|G|148
5LMQ|1|A|A|149
5LMQ|1|A|C|150
5LMQ|1|A|A|151
5LMQ|1|A|A|152
5LMQ|1|A|C|153
*
5LMQ|1|A|G|168
5LMQ|1|A|C|169
5LMQ|1|A|U|170
5LMQ|1|A|A|171
5LMQ|1|A|A|172
5LMQ|1|A|U|173
5LMQ|1|A|C|174
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain T
- 30S ribosomal protein S20
Coloring options: