IL_5LMQ_034
3D structure
- PDB id
- 5LMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LMQ_034 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.1118
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5LMQ|1|A|G|887
5LMQ|1|A|G|888
5LMQ|1|A|A|889
5LMQ|1|A|G|890
5LMQ|1|A|U|891
5LMQ|1|A|A|892
5LMQ|1|A|C|893
5LMQ|1|A|G|894
*
5LMQ|1|A|U|905
5LMQ|1|A|G|906
5LMQ|1|A|A|907
5LMQ|1|A|A|908
5LMQ|1|A|A|909
5LMQ|1|A|C|910
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
Coloring options: