IL_5LMQ_053

3D structure

PDB id

5LMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5LMQ|1|A|C|1400, 5LMQ|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMQ_053 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.1583

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5LMQ|1|A|C|1399
5LMQ|1|A|C|1400
5LMQ|1|A|G|1401
*
5LMQ|1|A|C|1501
5LMQ|1|A|A|1502
5LMQ|1|A|A|1503
5LMQ|1|A|G|1504

Current chains

Chain A

16S rRNA

Nearby chains

Chain Y

mRNA

Chain Z

Transfer RNA; tRNA