IL_5LMQ_061

3D structure

PDB id

5LMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

5LMQ|1|A|G|1442|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMQ_061 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.1635

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

5LMQ|1|A|C|1440
5LMQ|1|A|G|1441
5LMQ|1|A|G|1442
5LMQ|1|A|G|1442|||A
5LMQ|1|A|A|1442|||B
5LMQ|1|A|G|1443
*
5LMQ|1|A|C|1459
5LMQ|1|A|A|1460
5LMQ|1|A|G|1461

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20