IL_5LMS_045

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMS_045 not in the Motif Atlas

Geometric match to IL_4LFB_049

Geometric discrepancy: 0.1863

The information below is about IL_4LFB_049

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

5LMS|1|A|C|1128
5LMS|1|A|C|1129
5LMS|1|A|A|1130
5LMS|1|A|G|1131
5LMS|1|A|C|1132
*
5LMS|1|A|G|1142
5LMS|1|A|G|1143

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10