IL_5LMS_053

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMS_053 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.177

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5LMS|1|A|G|1401
5LMS|1|A|C|1402
5LMS|1|A|C|1403
5LMS|1|A|C|1404
*
5LMS|1|A|G|1497
5LMS|1|A|U|1498
5LMS|1|A|A|1499
5LMS|1|A|A|1500
5LMS|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

Translation initiation factor IF-3

Chain Y

mRNA

Chain Z

Transfer RNA; tRNA