IL_5LMS_065

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

UUU*GCAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMS_065 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3636

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

5LMS|1|A|U|1540
5LMS|1|A|U|1541
5LMS|1|A|U|1542
*
5LMS|1|Y|G|22
5LMS|1|Y|C|23
5LMS|1|Y|A|24
5LMS|1|Y|A|25

Current chains

Chain A

16S rRNA

Chain Y

mRNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain R

30S ribosomal protein S18