3D structure

PDB id
5LMU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
5LMU|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LMU_030 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1247
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

5LMU|1|A|G|683
5LMU|1|A|A|684
5LMU|1|A|G|685
5LMU|1|A|U|686
5LMU|1|A|A|687
5LMU|1|A|G|688
*
5LMU|1|A|C|699
5LMU|1|A|G|700
5LMU|1|A|C|701
5LMU|1|A|A|702
5LMU|1|A|G|703
5LMU|1|A|A|704
5LMU|1|A|U|705
5LMU|1|A|A|706
5LMU|1|A|C|707

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S11

Coloring options:


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