3D structure

PDB id
5LMU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GCAC*GUUCCC
Length
10 nucleotides
Bulged bases
5LMU|1|A|C|934
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LMU_036 not in the Motif Atlas
Homologous match to IL_6CZR_149
Geometric discrepancy: 0.1818
The information below is about IL_6CZR_149
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_93211.1
Basepair signature
cWW-cWS-cWW-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

5LMU|1|A|G|933
5LMU|1|A|C|934
5LMU|1|A|A|935
5LMU|1|A|C|936
*
5LMU|1|A|G|1379
5LMU|1|A|U|1380
5LMU|1|A|U|1381
5LMU|1|A|C|1382
5LMU|1|A|C|1383
5LMU|1|A|C|1384

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain I
30S ribosomal protein S9
Chain Y
mRNA
Chain Z
Transfer RNA; tRNA

Coloring options:


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