3D structure

PDB id
5LMU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CCG*CAAG
Length
7 nucleotides
Bulged bases
5LMU|1|A|C|1400, 5LMU|1|A|A|1503
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LMU_050 not in the Motif Atlas
Geometric match to IL_4V88_463
Geometric discrepancy: 0.2445
The information below is about IL_4V88_463
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
5

Unit IDs

5LMU|1|A|C|1399
5LMU|1|A|C|1400
5LMU|1|A|G|1401
*
5LMU|1|A|C|1501
5LMU|1|A|A|1502
5LMU|1|A|A|1503
5LMU|1|A|G|1504

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain Y
mRNA
Chain Z
Transfer RNA; tRNA

Coloring options:


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