IL_5LMV_017

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMV_017 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1112

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5LMV|1|A|G|409
5LMV|1|A|G|410
5LMV|1|A|A|411
5LMV|1|A|A|412
5LMV|1|A|G|413
5LMV|1|A|A|414
5LMV|1|A|A|415
5LMV|1|A|G|416
*
5LMV|1|A|U|427
5LMV|1|A|G|428
5LMV|1|A|U|429
5LMV|1|A|A|430
5LMV|1|A|A|431
5LMV|1|A|A|432
5LMV|1|A|C|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4