IL_5LMV_053

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

5LMV|1|A|A|1492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LMV_053 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.3333

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5LMV|1|A|C|1407
5LMV|1|A|A|1408
5LMV|1|A|C|1409
*
5LMV|1|A|G|1491
5LMV|1|A|A|1492
5LMV|1|A|A|1493
5LMV|1|A|G|1494

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain W

Translation initiation factor IF-1

Chain X

Translation initiation factor IF-3

Chain Y

mRNA