IL_5LQW_008

3D structure

PDB id

5LQW (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast activated spliceosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CU*AGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LQW_008 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.209

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

5LQW|1|6|C|69
5LQW|1|6|U|70
*
5LQW|1|6|A|76
5LQW|1|6|G|77
5LQW|1|6|G|78

Current chains

Chain 6

U6 snRNA

Nearby chains

Chain 5

U5 spliceosomal RNA; U5 snRNA

Chain 9

actin pre-mRNA

Chain A

Pre-mRNA-splicing factor 8

Chain M

Pre-mRNA-processing protein 45