IL_5LR4_004

3D structure

PDB id

5LR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA duplex has central consecutive GA pairs flanked by G-U basepairs with a methyl group on the adenine N6

Experimental method

X-RAY DIFFRACTION

Resolution

1.8 Å

Loop

Sequence

G(CBV)C*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LR4_004 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1143

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5LR4|1|C|G|1
5LR4|1|C|CBV|2
5LR4|1|C|C|3
*
5LR4|1|D|G|8
5LR4|1|D|G|9
5LR4|1|D|C|10

Current chains

Chain C

RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3')

Chain D

RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3')

Nearby chains

Chain A

RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3')

Chain B

RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3')