IL_5LYB_107

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

5LYB|1|1|G|2945, 5LYB|1|1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_107 not in the Motif Atlas

Homologous match to IL_5TBW_108

Geometric discrepancy: 0.0636

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5LYB|1|1|C|2879
5LYB|1|1|U|2880
5LYB|1|1|C|2881
*
5LYB|1|1|G|2943
5LYB|1|1|U|2944
5LYB|1|1|G|2945
5LYB|1|1|A|2946
5LYB|1|1|G|2947

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

aminoacyl-tRNA fragment ACCPmn

Chain L3

60S ribosomal protein L3

Chain N3

60S ribosomal protein L23-A