IL_5LYB_134

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_134 not in the Motif Atlas

Geometric match to IL_5TBW_135

Geometric discrepancy: 0.0729

The information below is about IL_5TBW_135

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5LYB|1|1|A|3342
5LYB|1|1|G|3343
5LYB|1|1|A|3344
5LYB|1|1|G|3345
*
5LYB|1|1|C|3360
5LYB|1|1|G|3361
5LYB|1|1|A|3362
5LYB|1|1|U|3363

Current chains

Chain 1

25S rRNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain S8

40S ribosomal protein S8-A