IL_5LYB_146

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5LYB|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_146 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.0985

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

5LYB|1|2|G|143
5LYB|1|2|U|144
5LYB|1|2|A|145
5LYB|1|2|U|146
5LYB|1|2|A|147
5LYB|1|2|A|148
5LYB|1|2|C|149
*
5LYB|1|2|G|165
5LYB|1|2|C|166
5LYB|1|2|U|167
5LYB|1|2|A|168
5LYB|1|2|A|169
5LYB|1|2|U|170
5LYB|1|2|A|171
5LYB|1|2|C|172

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A