IL_5LYB_228
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- AGUG*CAU
- Length
- 7 nucleotides
- Bulged bases
- 5LYB|1|3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LYB_228 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.0699
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
5LYB|1|3|A|84
5LYB|1|3|G|85
5LYB|1|3|U|86
5LYB|1|3|G|87
*
5LYB|1|3|C|94
5LYB|1|3|A|95
5LYB|1|3|U|96
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L7
- 60S ribosomal protein L7-A
- Chain M0
- 60S ribosomal protein L10
- Chain N0
- 60S ribosomal protein L20-A
Coloring options: