IL_5LYB_310

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

5LYB|1|5|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_310 not in the Motif Atlas

Homologous match to IL_5TBW_077

Geometric discrepancy: 0.0683

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5LYB|1|5|A|1901
5LYB|1|5|G|1902
5LYB|1|5|U|1903
5LYB|1|5|C|1904
5LYB|1|5|G|1905
5LYB|1|5|G|1906
*
5LYB|1|5|C|2333
5LYB|1|5|U|2334
5LYB|1|5|G|2335
5LYB|1|5|U|2336

Current chains

Chain 5

25S rRNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain n3

60S ribosomal protein L23-A