IL_5LYB_366

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

5LYB|1|5|U|3354, 5LYB|1|5|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_366 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.1583

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5LYB|1|5|C|3349
5LYB|1|5|C|3350
*
5LYB|1|5|G|3353
5LYB|1|5|U|3354
5LYB|1|5|U|3355
5LYB|1|5|G|3356

Current chains

Chain 5

25S rRNA

Nearby chains

Chain n2

60S ribosomal protein L22-A

Chain s8

40S ribosomal protein S8-A