IL_5LYB_373
3D structure
- PDB id
- 5LYB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 5LYB|1|6|U|66, 5LYB|1|6|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5LYB_373 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.0571
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LYB|1|6|U|64
5LYB|1|6|A|65
5LYB|1|6|U|66
5LYB|1|6|A|67
5LYB|1|6|A|68
5LYB|1|6|G|69
*
5LYB|1|6|U|82
5LYB|1|6|G|83
5LYB|1|6|A|84
5LYB|1|6|A|85
5LYB|1|6|A|86
Current chains
- Chain 6
- 18S rRNA
Nearby chains
- Chain d4
- 40S ribosomal protein S24-A
- Chain n4
- 60S ribosomal protein L24-A
- Chain s6
- 40S ribosomal protein S6-A
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