IL_5LYB_374

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_374 not in the Motif Atlas

Homologous match to IL_4V88_391

Geometric discrepancy: 0.0906

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5LYB|1|6|G|109
5LYB|1|6|U|110
5LYB|1|6|U|111
5LYB|1|6|A|112
*
5LYB|1|6|U|302
5LYB|1|6|U|303
5LYB|1|6|U|304
5LYB|1|6|C|305

Current chains

Chain 6

18S rRNA

Nearby chains

Chain c1

40S ribosomal protein S11-A,40S ribosomal protein S11-A,40S Ribosomal Protein S11-A

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8-A