IL_5LYB_403

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_403 not in the Motif Atlas

Homologous match to IL_4V88_421

Geometric discrepancy: 0.0527

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5LYB|1|6|G|703
5LYB|1|6|C|704
5LYB|1|6|U|705
5LYB|1|6|A|706
5LYB|1|6|A|707
5LYB|1|6|C|708
*
5LYB|1|6|G|730
5LYB|1|6|C|731
5LYB|1|6|G|732
5LYB|1|6|A|733
5LYB|1|6|A|734
5LYB|1|6|C|735

Current chains

Chain 6

18S rRNA

Nearby chains