IL_5LYB_437

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

5LYB|1|6|A|1346, 5LYB|1|6|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_437 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.0805

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

5LYB|1|6|A|1345
5LYB|1|6|A|1346
5LYB|1|6|U|1347
5LYB|1|6|A|1348
*
5LYB|1|6|U|1377
5LYB|1|6|U|1378
5LYB|1|6|C|1379
5LYB|1|6|U|1380

Current chains

Chain 6

18S rRNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d0

40S ribosomal protein S20