3D structure

PDB id
5LYB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn
Experimental method
X-RAY DIFFRACTION
Resolution
3.25 Å

Loop

Sequence
UCAAC*GGA
Length
8 nucleotides
Bulged bases
5LYB|1|1|G|1514
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5LYB_468 not in the Motif Atlas
Homologous match to IL_8P9A_290
Geometric discrepancy: 0.0941
The information below is about IL_8P9A_290
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.11
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
19

Unit IDs

5LYB|1|1|U|1501
5LYB|1|1|C|1502
5LYB|1|1|A|1503
5LYB|1|1|A|1504
5LYB|1|1|C|1505
*
5LYB|1|1|G|1513
5LYB|1|1|G|1514
5LYB|1|1|A|1515

Current chains

Chain 1
25S rRNA

Nearby chains

Chain M7
60S ribosomal protein L17-A
Chain M9
60S ribosomal protein L19-A
Chain O9
60S ribosomal protein L39

Coloring options:


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