IL_5LYB_473

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_473 not in the Motif Atlas

Geometric match to IL_8AF0_001

Geometric discrepancy: 0.1984

The information below is about IL_8AF0_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5LYB|1|1|G|3345
5LYB|1|1|U|3346
5LYB|1|1|A|3347
*
5LYB|1|1|U|3358
5LYB|1|1|A|3359
5LYB|1|1|C|3360

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N2

60S ribosomal protein L22-A

Chain S8

40S ribosomal protein S8-A