IL_5LYB_479

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_479 not in the Motif Atlas

Homologous match to IL_8C3A_001

Geometric discrepancy: 0.1395

The information below is about IL_8C3A_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LYB|1|5|G|5
5LYB|1|5|A|6
5LYB|1|5|C|7
*
5LYB|1|8|G|152
5LYB|1|8|U|153
5LYB|1|8|C|154

Current chains

Chain 5

25S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain l8

60S ribosomal protein L8-A,60S ribosomal protein L8-A,60S Ribosomal Protein L8