IL_5LYB_483

3D structure

PDB id

5LYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

5LYB|1|5|U|1820, 5LYB|1|5|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYB_483 not in the Motif Atlas

Homologous match to IL_8P9A_293

Geometric discrepancy: 0.2213

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

5LYB|1|5|G|1623
5LYB|1|5|G|1624
*
5LYB|1|5|U|1819
5LYB|1|5|U|1820
5LYB|1|5|U|1821
5LYB|1|5|C|1822

Current chains

Chain 5

25S rRNA

Nearby chains

Chain o4

60S ribosomal protein L34-A