IL_5LYU_002

3D structure

PDB id

5LYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

The native crystal structure of 7SK 5'-hairpin

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CC*GCUG

Length

6 nucleotides

Bulged bases

5LYU|1|A|U|72||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5LYU_002 not in the Motif Atlas

Homologous match to IL_5LYS_006

Geometric discrepancy: 0.0666

The information below is about IL_5LYS_006

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

5LYU|1|A|C|36
5LYU|1|A|C|37
*
5LYU|1|A|G|70
5LYU|1|A|C|71||A
5LYU|1|A|U|72||A
5LYU|1|A|G|73||A

Current chains

Chain A

7SK RNA

Nearby chains

Chain B

7SK RNA